Research Groups

 

Publications of Kathi Zarnack (Results: 22)

 

Differential Binding of Mitochondrial Transcripts by MRB8170 and MRB4160 Regulates Distinct Editing Fates of Mitochondrial mRNA in Trypanosomes.
mBio
Dixit S, Müller-McNicoll M, David V, Zarnack K, Ule J, Hashimi H, Lukeš J PubMed
Jan 2017 Volume: 8 Issue: 1 Pages:

Insights into the design and interpretation of iCLIP experiments.
Genome biology
Haberman N, Huppertz I, Attig J, König J, Wang Z, Hauer C, Hentze MW, Kulozik AE, Le Hir H, Curk T, Sibley CR, Zarnack K, Ule J PubMed
Jan 2017 Volume: 18 Issue: 1 Pages: 7

Splicing repression allows the gradual emergence of new Alu-exons in primate evolution.
eLife
Attig J, Ruiz de Los Mozos I, Haberman N, Wang Z, Emmett W, Zarnack K, König J, Ule J PubMed
Nov 2016 Volume: 5 Issue: Pages:

SR proteins are NXF1 adaptors that link alternative RNA processing to mRNA export.
Genes & development
Müller-McNicoll M, Botti V, de Jesus Domingues AM, Brandl H, Schwich OD, Steiner MC, Curk T, Poser I, Zarnack K, Neugebauer KM PubMed
Mar 2016 Volume: 30 Issue: 5 Pages: 553-66

Recognition of distinct RNA motifs by the clustered CCCH zinc fingers of neuronal protein Unkempt.
Nature structural & molecular biology
Murn J, Teplova M, Zarnack K, Shi Y, Patel DJ PubMed
Jan 2016 Volume: 23 Issue: 1 Pages: 16-23

Intergenic Alu exonisation facilitates the evolution of tissue-specific transcript ends.
Nucleic acids research
Tajnik M, Vigilante A, Braun S, Hänel H, Luscombe NM, Ule J, Zarnack K, König J PubMed
Dec 2015 Volume: 43 Issue: 21 Pages: 10492-505

Control of a neuronal morphology program by an RNA-binding zinc finger protein, Unkempt.
Genes & development
Murn J, Zarnack K, Yang YJ, Durak O, Murphy EA, Cheloufi S, Gonzalez DM, Teplova M, Curk T, Zuber J, Patel DJ, Ule J, Luscombe NM, Tsai LH, Walsh CA, Shi Y PubMed
Mar 2015 Volume: 29 Issue: 5 Pages: 501-12

The RNA-binding protein HuR is essential for the B cell antibody response.
Nature immunology
Diaz-Muñoz MD, Bell SE, Fairfax K, Monzon-Casanova E, Cunningham AF, Gonzalez-Porta M, Andrews SR, Bunik VI, Zarnack K, Curk T, Heggermont WA, Heymans S, Gibson GE, Kontoyiannis DL, Ule J, Turner M PubMed
Apr 2015 Volume: 16 Issue: 4 Pages: 415-25

Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements.
Cell
Zarnack K, König J, Tajnik M, Martincorena I, Eustermann S, Stévant I, Reyes A, Anders S, Luscombe NM, Ule J PubMed
Jan 2013 Volume: 152 Issue: 3 Pages: 453-66

Protein-RNA interactions: new genomic technologies and perspectives.
Nature reviews. Genetics
König J, Zarnack K, Luscombe NM, Ule J PubMed
Jan 2012 Volume: 13 Issue: 2 Pages: 77-83

Analysis of alternative splicing associated with aging and neurodegeneration in the human brain.
Genome research
Tollervey JR, Wang Z, Hortobágyi T, Witten JT, Zarnack K, Kayikci M, Clark TA, Schweitzer AC, Rot G, Curk T, Zupan B, Rogelj B, Shaw CE, Ule J PubMed
Oct 2011 Volume: 21 Issue: 10 Pages: 1572-82

The RNA-binding protein Rrm4 is essential for efficient secretion of endochitinase Cts1.
Molecular & cellular proteomics : MCP
Koepke J, Kaffarnik F, Haag C, Zarnack K, Luscombe NM, König J, Ule J, Kellner R, Begerow D, Feldbrügge M PubMed
Dec 2011 Volume: 10 Issue: 12 Pages: M111.011213

iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.
Journal of visualized experiments : JoVE
Konig J, Zarnack K, Rot G, Curk T, Kayikci M, Zupan B, Turner DJ, Luscombe NM, Ule J PubMed
Apr 2011 Volume: Issue: 50 Pages:

iCLIP predicts the dual splicing effects of TIA-RNA interactions.
PLoS biology
Wang Z, Kayikci M, Briese M, Zarnack K, Luscombe NM, Rot G, Zupan B, Curk T, Ule J PubMed
Oct 2010 Volume: 8 Issue: 10 Pages: e1000530

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution.
Nature structural & molecular biology
König J, Zarnack K, Rot G, Curk T, Kayikci M, Zupan B, Turner DJ, Luscombe NM, Ule J PubMed
Jul 2010 Volume: 17 Issue: 7 Pages: 909-15

Microtubule-dependent mRNA transport in fungi.
Eukaryotic cell
Zarnack K, Feldbrügge M PubMed
Jul 2010 Volume: 9 Issue: 7 Pages: 982-90

Tandem KH domains of Khd4 recognize AUACCC and are essential for regulation of morphology as well as pathogenicity in Ustilago maydis.
RNA (New York, N.Y.)
Vollmeister E, Haag C, Zarnack K, Baumann S, König J, Mannhaupt G, Feldbrügge M PubMed
Dec 2009 Volume: 15 Issue: 12 Pages: 2206-18

The fungal RNA-binding protein Rrm4 mediates long-distance transport of ubi1 and rho3 mRNAs.
The EMBO journal
König J, Baumann S, Koepke J, Pohlmann T, Zarnack K, Feldbrügge M PubMed
Jul 2009 Volume: 28 Issue: 13 Pages: 1855-66

Pheromone-regulated target genes respond differentially to MAPK phosphorylation of transcription factor Prf1.
Molecular microbiology
Zarnack K, Eichhorn H, Kahmann R, Feldbrügge M PubMed
Aug 2008 Volume: 69 Issue: 4 Pages: 1041-53

The posttranscriptional machinery of Ustilago maydis.
Fungal genetics and biology : FG & B
Feldbrügge M, Zarnack K, Vollmeister E, Baumann S, Koepke J, König J, Münsterkötter M, Mannhaupt G PubMed
Aug 2008 Volume: 45 Suppl 1 Issue: Pages: S40-6

mRNA trafficking in fungi.
Molecular genetics and genomics : MGG
Zarnack K, Feldbrügge M PubMed
Oct 2007 Volume: 278 Issue: 4 Pages: 347-59

Tetracycline-regulated gene expression in the pathogen Ustilago maydis.
Fungal genetics and biology : FG & B
Zarnack K, Maurer S, Kaffarnik F, Ladendorf O, Brachmann A, Kämper J, Feldbrügge M PubMed
Nov 2006 Volume: 43 Issue: 11 Pages: 727-38